発表論文 2011～現在
1. Machida Y., Suzuki T., Sasabe M., Iwakawa H., Kojima S., Machida C. Arabidopsis ASYMMETRIC LEAVES2 (AS2): roles in plant morphogenesis, cell division, and pathogenesis J. Plant Research 2022 135:3–14 (doi.org/10.1007/s10265-021-01349-6) [PubMed]
2. Ayami Nakagawa*, Kazuaki Kawasaki, Sayuri Ando, Haruka Funahashi, Kaname Tsutsumiuchi, Shoko Kojima, Satsuki Miwa, Johji Miwa, Chiyoko Machida*, Establishment of the optimal condition for shoot regeneration in Vitis vinifera 'Koshu' Annual Report of Research Institute for Biological Function (Chubu University), 22, 48-56 (2022).
3. Takahashi, H.*, Iwaguchi S, Kondo, H., Motomura, T., Murase, M., Takahashi, A., Fukuyoshi, S., Machida, C., Kanamasa, S., Yamamoto, S., Yoshizaki, T.* Draft Genome Sequence of NYR20, a Red Pigment-Secreting Mutant of Saccharomyces cerevisiae. Microbiology Resource Announcements 10: 1 (2021) (DOI: 10.1128/MRA.01161-20)
4. Iwakawa H., Takahashi H., *Machida Y., and *Machida C., Roles of ASYMMETRIC LEAVES2 (AS2) and nucleolar proteins in the adaxial-abaxial polarity specification at the perinucleolar region in Arabidopsis, Int. J. Mol. Sci., 21, E7314, 2020 (DOI: 10.3390/ijms21197314)
5. Luo L., Ando S., Sakamoto Y., Suzuki T., Takahashi H., Ishibashi N., Kojima S., Kurihara D., Higashiyama T., Yamamoto K., *Matsunaga S., *Machida C., *Sasabe M., *Machida Y., The formation of perinucleolar bodies is important for normal leaf development and requires the zinc-finger DNA-binding motif in Arabidopsis ASYMMETRIC LEAVES2, Plant J. 101(5):1118-1134 (2020) (DOI: 10.1111/tpj.14579) [PubMed]
6. Takahashi, H.*, Yoshizaki, T. (co-first author), Kondo, H., Motomura, T., Murase, M., Takahashi, A., Fukuyoshi, S., Machida, C., Kanamasa, S., Shimizu, H., Iwaguchi, S.* Draft Genome Sequence of Saccharomyces cerevisiae Strain P-684, Isolated from Prunus verecunda. Microbiology Resource Announcements 9: 41 (2020) DOI: 10.1128/MRA.00926-20
7. Vial-Pradel S., Hasegawa Y., Nakagawa A., Miyaki S., Machida Y., Kojima S., *Machida C., *Takahashi H., SIMON: Simple methods for analyzing DNA methylation by targeted bisulfite next-generation sequencing, Plant Biotechnol. 36(4): 213-222 (2019) (DOI: 10.5511/plantbiotechnology.19.0822a)
8. *Kanamasa S., Yamaguchi D., Machida C., Fujimoto T., Takahashi A., Murase M., Fukuyoshi S., Oda A., Satou K., and *Takahashi H., Draft Genome Sequence of Saccharomyces cerevisiae Strain Pf-1, Isolated from Prunus mume, Microbiol. Resour. Announc. 8(46), e01169-19, 2019 (DOI: 10.1128/MRA.01169-19) [PubMed]
9. *Takahashi H., Sakagawa E., Sakakibara I., Machida C., Miyaki S., Takahashi A., Onai S., Fukuyoshi S., Ohta A., Satou K., and *Kanamasa S., Draft Genome Sequence of Yeast Saccharomyces cerevisiae Strain Hm-1 Isolated from Cotton Rosemallow, Microbiol. Resour. Announc., 7(13), e01184-18, 2018(DOI: 10.1128/MRA.01184-18) [PubMed]
10. Vial-Pradel S., Keta S., Nomoto M., Luo L., Takahashi H., Suzuki M., Yokoyama Y., Sasabe M., Kojima S., Tada Y., Machida Y., Machida C. (2018) Arabidopsis zinc-finger-like protein ASYMMETRIC LEAVES2 (AS2) and two nucleolar proteins maintain gene body DNA methylation in the leaf polarity gene ETTIN (ARF3). Plant Cell Physiol 1385-1397
11. Luong Q. T., Keta S., Asai T., Kojima S., Nakagawa A., Micol J. L., Xia S., Machida Y. and Machida C. (2018) A genetic link between epigenetic repressor AS1-AS2 and DNA replication factors in establishment of adaxial-abaxial leaf polarity of Arabidopsis Plant Biotechnology 35, 39–49 DOI:10.5511/plantbiotechnology.18.0129b
12. Matsumura Y., Ohbayashi I., Takahashi H., Kojima S., Ishibashi N., Keta S., Nakagawa A., Hayashi R., Saez-Vasquez J., Echeverria M., Sugiyama M., Nakamura K., Machida C. and Machida Y. (2016) A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis Biol. Open, 5, 942-954. DOI:10.1242/bio.019109 [PubMed]
13. Machida C., Nakagawa A., Kojima S., Takahashi H., and Machida Y. The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. WIREs Developmental Biology 4, 655-671 (2015) DOI: 10.1002/wdev.196
14. Ishibashi N., Kitakura S., Terakura S., Machida C. and Machida Y. Protein encoded by oncogene 6b from Agrobacterium tumefaciens has a reprogramming potential and histone chaperone-like activity. Front. Plant Sci. 2014, 5:572-578 (2014) doi:10.3389/fpls.2014.00572.
15. Ishibashi N., Machida C. and Machida M. ASYMMETRIC LEAVES2 and FASCIATA2 cooperatively regulate the formation of leaf adaxial-abaxial polarity in Arabidopsis thaliana. Plant Biotechnology 30, 411-415 (2013)
doi:10.5511/plantbiotechnology.13.0513a
16. Iwasaki M., Takahashi H., Iwakawa H., Nakagawa A., Ishikawa T., Tanaka h., Matsumura Y., Pekker I., Eshed Y., Vial-Pradel S., Ito T., Watanabe Y., Ueno Y., Fukazawa H., Kojima S., Machida Y. and Machida C. Dual regulation of ETTIN (ARF3) gene expression by AS1-AS2, which maintains the DNA methylation level, is involved in stabilization of leaf adaxial-abaxial partitioning in Arabidopsis. Development 140, 1958-1969 (2013)
17. Takahashi H., Iwakawa H., Ishibashi N., Iwasaki, M., Kojima, S., Matsumura Y., Prananingrum, P., Takahashi, A., Ikezaki, M., Luo, L., Kobayashi, T., Machida, Y. and Machida, C. Meta-analyses of microarrays of Arabidopsis asymmetric leaves2 (as2) and as1 mutants reveal a critical role of the ETT pathway in stabilization of adaxial-abaxial patterning and cell division during leaf development. Plant Cell Physiol 54, 418-431 (2013) [PubMed]
18. Takahashi H., Nakagawa A., Kojima S., Takahashi A., Cha B. Y., Woo J., Nagai K., Machida Y. and Machida C. Discovery of novel rules for G-quadruplex-forming sequences in plants by using bioinformatics methods. J. Bioscience and Bioengineering 114, 570-575 (2012)
19. Nakagawa A., Takahashi H., Kojima S., Sato N., Ohga K., Cha B. Y., Woo J., Nagai K., Horiguchi G., Tsukaya H., Machida Y. and Machida C. Berberine enhances defects in the establishment of leaf polarity in asymmetric leaves1 and asymmetric leaves2 of Arabidopsis thaliana. Plant Molecular Biology 79, 569-581 (2012)
20. Keta S., Iwakawa I., Ikezaki M., Semiarti E., Kojima S., Machida Y. and Machida C. Roles of the ASYMMETRIC LEAVES2 gene in floral organ development in Arabidopsis thaliana. Plant Biotechnology 29, 1-8 (2012)
21. Ishibashi N., Kanamaru K., Ueno Y., Kojima S., Kobayashi T., Machida C. and Machida Y. ASYMMETRIC-LEAVES2 and an ortholog of eukaryotic NudC domain proteins repress expression of AUXIN-RESPONSE-FACTOR and class 1 KNOX homeobox genes for development of flat symmetric leaves in Arabidopsis. Biology Open 1, 197-207 (2012)
22. Luo L., Ando S., Sasabe M., Machida C., Kurihara D., Higashiyama T. and Machida Y. Arabidopsis ASYMMETRIC LEAVES2 protein required for leaf morphogenesis consistently forms speckles during mitosis of tobacco BY-2 cells via signals in its specific sequence. Journal of Plant Research 125, 661-668 (2012)
23. Semiarti E., Indrianto A., Purwantoro A., Machida Y. and Machida C. Agrobacterium-Mediated Transformation on Indonesian Orchids for Micropropagation Genetic Transformation. (InTech - Open Access Publisher) (Rijeka, Croatia) (2011)
24. Kojima S., Iwasaki M., Takahashi H., Imai T., Matsumura Y., Fleury D., Van Lijsebettens M., Machida Y. and Machida C. ASYMMETRIC LEAVES2 and Elongator, a Histone Acetyltransferase Complex, Mediate the Establishment of Polarity in Leaves of Arabidopsis thaliana. Plant Cell Physiol. 52(8), 1259-1273 (2011) [PubMed]
国際学会、国際会議発表等
1. Ando S., Iwakawa H., Kojima S., Machida Y., Machida C. Roles of ASYMMETRIC LEAVES2 (AS2) and NUCLEOLIN1 in the Adaxial-Abaxial PolaritySpecification at the Perinucleolar Region in Arabidopsis. July 16, 2021 The Mechanisms of Plant Development. FASEB SRC (USA) WEB
2. Ando S., Ogawa T., Kojima S., Sakamoto Y., Matsunaga S., Machida Y., and Machida C. Roles of perinucleolar AS2 bodies and the nucleolus in the establishment of leaf polarity in Arabidopsis thaliana. Plant Organ Growth Sympojium 2019（POGS2019） 24-26, April, 2019 (Bordeaux, France)
3. Machida C., Vial-Pradel S., Nomoto M., Takahashi H., Kojima S., Tada Y.and Machida Y.Roles of Nucleolar Proteins and Zinc-Finger Protein ASYMMETRIC LEAVES2 in the establishment of leaf adaxial-abaxial polarity in Arabidopsis thaliana. Plant Organ Growth Sympojium 2019（POGS2019） 24-26, April, 2019 (Bordeaux,France)
4. Vial-Pradel S. Nomoto M., Takahashi H., Ando S., Suzuki M., Kojima S., Tada Y., Machida Y., Machida C. Arabidopsis zinc-finger-like protein ASYMMETRIC LEAVES2 (AS2) bound exon 1 of ETTIN (ARF3) and maintain gene body DNA methylation in ETTIN together with nucleolar proteins EMBO workshop New shores in land plant evolution 20-22, June, 2018 (Lisbon, Portugal)
5. Vial-Pradel S., Keta S., Nakagawa A., Suzuki M., Matsumura Y., Kojima S., Machida Y. and Machida C. (2017) Genetic and molecular interactions between nucleolar factors and AS1-AS2 for regulation of ETT/ARF3 expression in establishment of leaf polarity in Arabidopsis thaliana. Bilateral Closure Symposium of GDRI Integrative Plant Biology Network, France Lyon, October 23-25
6. Machida C. Vial-Pradel S., Nakagawa A., Ito T., Iwasaki M., Ito T., Machida Y. Epigenetic regulator AS1-AS2 maintains the level of gene body DNA methylation of ETTIN in establishment of leaf adaxial-abaxial polarity in Arabidopsis thaliana. Mechanisms in Plant Development. August 2-7, 2015 (Saxtons River, Vermont, USA)
7. Nakagawa A., Takahashi H., Kojima S., Machida Y., Machida C. Chemical genetic analyses infer that AS1-AS2 protects developing leaves from camptothecin influence by repressing ARF3 and KRP5. Mechanisms in Plant Development. August 2-7, 2015 (Saxtons River, Vermont, USA)
8. Vial-Pradel S., Nakagawa A., Iwasaki M., Ito T., Machida Y., Machida C. Epigenetic regulation of ETTIN in leaf adaxial-abaxial patterning in Arabidopsis thaliana. XII France-Japan Workshop on Plant Science 2014 -Plant Responses to Environment. October 27-29, 2014 (Yayoi Auditorium, The University of Tokyo)
9. Nakagawa A., Takahashi H., Ito T., Kojima S., Machida Y., Machida C. Chemical genetic analyses infer that AS1-AS2 controls cell division through ETTIN in leaf adaxial-abaxial and medio-lateral patterning. The 25th International Conference on Arabidopsis Research (ICAR2014). July 28 – August 1, 2014 (University of British Columbia Vancouver, Canada).
10. Machida C., Luo L., Keta S., Kurihara D., Ishibashi N., Sasabe M., Machida Y. Epigenetic regulator ASYMMETRIC LEAVES2 protein presented around nucleoli and required for establishment of leaf adaxial cell differentiation consistently forms speckles during mitosis. The 25th International Conference on Arabidopsis Research (ICAR2014). July 28 – August 1, 2014 (University of British Columbia Vancouver, Canada).
11. Ito T., Vial-Pradel S., Takada E., Nakagawa A., Iwasaki M., Machida Y., Machida C. Epigenetic regulator AS1-AS2 is involved in gene body DNA methylation of ETTIN in establishment of leaf adaxial-abaxial polarity in Arabidopsis thaliana. The 25th International Conference on Arabidopsis Research (ICAR2014). July 28 – August 1, 2014 (University of British Columbia Vancouver, Canada).
12. Takahashi H., Nakagawa A., Ishibashi N., Kojima S., Machida Y., Machida C. Knowledge-based bioinformatic analyses of microarrays predict that epigenetic regulator AS1-AS2 controls cell division through ETTIN in leaf adaxial-abaxial patterning. The 25th International Conference on Arabidopsis Research (ICAR2014). July 28 – August 1, 2014 (University of British Columbia Vancouver, Canada).
13. Kojima S., Takahashi H., Ishibashi N., Handayani A., Matsumura Y., Machida Y., Machida C. ASYMMETRIC LEAVES1 (AS1) and AS2 regulate the expression of AtIPT3 through AUXIN RESPONSE FACTOR3/ETTIN function during leaf development in Arabidopsis thaliana. International Symposium 2014 on Auxins and Cytokinins in Plant Development. June 29 – July 4, 2014 (Prague, Czech Republic)
14. Ishibashi N., Kojima S., Kojima M., Sakakibara H., Takahashi H., Machida C. Machida Y. AS2 and BOB1 synergistically regulate cytokinin levels and the establishment of leaf adaxial-abaxial polarity through the ETT/ARF3-IPT3 pathway in Arabidopsis thaliana. International Symposium 2014 on Auxins and Cytokinins in Plant Development. June 29 – July 4, 2014 (Prague, Czech Republic)
15. Kojima S., Takahashi H., Ishibashi N., Handayani A., Matsumura Y., Prananingrum P., Machida Y. and Machida C. Federation of American Societies for Experimental Biology Science Research Conference Mechanisms in Plant Development. The 2013 FASEB Science Research Conferences (SRC). Mechanisms in Plant Development. August 11-16, 2013 (Vermont Academy)
16. Machida Y., Iwasaki M., Takahashi H., Nakagawa A., Kojima S., Matsumura Y., Ishibashi N., Luo L., PrananingrumP., Takahashi M., Minami A., Sasabe M., Eshed Y. and Machida C. ASYMMETRIC LEAVES2 (AS2)/AS1 is a developmental stabilizer for the leaf formation in Arabidopsis. 4th NIBB-MPIPZ-TLL Symposium “Arabidopsis and Emerging Model Systems”. November, 2012 (Okazaki)
17. Machida C. Epigenetic regulation of the Auxin Response Factor3 gene by AS1-AS2 in stabilization of leaf adaxial-abaxial partitioning in Arabidopsis thaliana. 4th NIBB-MPIPZ-TLL Symposium “Arabidopsis and Emerging Model Systems”. November, 2012 (Okazaki)
18. Nakagawa A., Takahashi H., Kojima S., Sato N., Ohga K., Cha B. Y., Woo J., Nagai K., Horiguchi G., Tsukaya H., Machida Y. and Machida C. Berberine enhances defects in the establishment of leaf adaxial-abaxial polarity in asymmetric leaves1 and asymmetric leaves2 of Arabidopsis thaliana. 23rd International Conference on Arabidopsis Research (ICAR2012). July, 2012 (Vienna)
